UF LABORATORY FOR SYSTEMS MEDICINE
Former Lab Team Members

Adi Cohen
I graduated from the University of Florida pre-med program with a major in Biology and minors in Disabilities in Society and Health Disparities in Society. I worked with Dr. Brunson on a systematic review of medical literature to determine how patient similarity–based individualized modeling is conducted using retrospective data. I currently attend Nova Southeastern University for medical school to further my passion for medicine and healthcare.

Ryan Elkind
I am a third-year Mathematics and Economics double major at the University of Florida, with a mathematical background in topological data analysis. I am working with Dr. Brunson on an analysis of the structure and function of glomerular capillaries. Using computational methods, we aim to characterize the three-dimensional structure of the glomerular capillary network, with the objective of providing useful insight into glomerular function.

Baylor Fain
A bio-physicist that applies computational and mathematical techniques, commonly used in Physics, to solve important problems in virology, epidemiology, public health and beyond.
Areas of Interest:
Agent-based models
Non-markovian processes
Master equations
Inquiry-based learning

Nobel Chowdary Mandepudi
Nobel was a Graduate Research Assistant with Dr. Brunson on the CTSI Precision Health Initiative Pilot Award project “Efficient Modeling of Individualized COVID-19 Mortality Risk”. He completed a Master’s degree in the Department of Computer and Information Science and Engineering (CISE) and is currently interning at Arm.

Bhuvan Muvva
UF Graduate Scholar
Research with Dr. Cory Brunson

Lisa M. Oppel
Lisa received her BFA from College of Fine Arts in 2010. She has since worked in the realms of ideas and budgets on film sets and later in the UF College of Medicine. Lisa took a promotion with the UF College of the Arts as Grants Accountant.

Abhinav Penmetcha
I am a Biology major and Bioinformatics minor at UF and will be graduating in May 2024. I am working with Dr. Brunson on a project to analyze the relationships between race/ethnicity, socioeconomic determinants of health, clinical profiles, and post-transplant survival in lung transplant patients through statistical modeling. With these models, we hope to gain a better understanding of the set of interaction effects between these variables to gauge the historical and current statuses of disparities in lung transplantation.

Bruce Shapiro
I was Research Assistant Professor in the Laboratory for Systems Medicine. I managed the standup of the lab’s physical presence in the College of Medicine and tracked all room remodeling from inception to completion. I am currently Associate Professor of Mathematics at Rock Valley College.

Yara N Skaf
Areas of Interest:
Biomedical informatics
Computational biology
Mathematical data science
Topological Data Analysis (TDA)

Igor Sokolov
I am a UF class of 2023 mathematics major with a physics minor working with Dr. Brunson and Dr. Sordo Vieira on creating a software package to perform analysis on signal transduction networks using minimal functional routes, graph expansion and the route modulus. I hope that this work will prove a valuable tool for researchers and further our understanding of static boolean networks.

Kristina Suarez
I graduated from the University of Florida with a BS in Mathematics and plan to attend medical school in Fall 2023. I am working with Dr. Brunson on a study of the structure and function of glomerular capillaries using network and topological analysis.

Van Thuy Truong
I am a pharmacist by training and an applied mathematics PhD student with AstraZeneca and University of Leeds, UK. I am working on combining agent-based models with pharmacokinetic-pharmacodynamic models (simulated as ODEs and PDEs) to predict tumour growth and interaction with immune cells during mono and combination therapy. I am visiting the systems medicine lab to work with Dr. Fonseca and learn about techniques to fit ODEs to my agent-based model for predicting tumour behaviour and optimising treatment schedules.

Melody Walker
I was a Postdoctoral Associate in the Laboratory for Systems Medicine. I performed biological experiments on endothelial cells and monocytes as well as worked on a mathematical model of endothelial cells. I am now a Postdoctoral Fellow for the College of Pharmacy at UF.

Veronika Zeindl
I graduated from the Technical University of Munich with a MS in Mathematics. I worked with Dr. Walker on understanding the sensitivity analysis method eFAST. The ultimate goal is to use eFAST to analyze and reduce agent-based models.

Xinya Zhang
I am a third-year Statistics and Mathematics major and Computer Science minor at UF. I am working with Dr. Brunson on a project that compares conventional statistical learning models with individualized cohort models on clinical diagnosis. I plan to attend graduate school in biostatistics or data science, and I wish to work with healthcare data science in the future.

Samantha Williams
UF Graduate Scholar
Research with Dr. Cory Brunson

Sofia John
I am a third-year Statistics major and Women’s Studies minor at UF. I have been working on a project to create an agent-based model of bleomycin-induced pulmonary fibrosis with Dr. Sordo Vieira and Dr. Wheeler. It is our hope with this model to be able to better understand the mechanisms which induce fibrosis in the lungs. My interest in computational modeling began in high school after I participated in an internship with the Integrated Mathematical Oncology department at Moffitt Cancer Center. There I worked on differential equations to model dormancy in multiple myeloma with Dr. Miller and Dr. Basanta. Outside of research, I volunteer in the Pediatric Cardiac ICU and the Pediatric ICU at Shands Children’s Hospital through a student organization called Dream Team and I also work with the Alachua County Victim Services and Rape Crisis Center as a helpline volunteer.

Ivan Ramirez Zuniga
I was a postdoctoral associate in the Laboratory for Systems Medicine, working with Dr. Sordo Vieira, where I developed mathematical models of the immune response to Aspergillosis. Currently, I am an Assistant Professor in the Department of Mathematics, with a courtesy appointment in the Department of Epidemiology and Biostatistics at the University of Texas at Tyler.
