Some software projects are ever-evolving, involve large teams, are distributed for different systems, and have many associated publications. Others consist of standalone packages designed to interoperate and adhere to common conventions and standards.
Immune response to respiratory diseases
Multi-scale computational modeling of the immune response to opportunistic infection.
TDAverse
An accessible and extensible collection of R packages with implementations and bindings of core tools for topological data analysis.
Other software
- Brunson JC and Read QD (2026). ggalluvial: Alluvial Plots in ‘ggplot2’. doi:10.32614/CRAN.package.ggalluvial, R package version 0.12.6, https://cran.r-project.org/package=ggalluvial.
- Brunson JC, Paul E, Gracey J (2025). ordr: A ‘Tidyverse’ Extension for Ordinations and Biplots. doi:10.32614/CRAN.package.ordr, R package version 0.2.0, https://cran.r-project.org/package=ordr
- Brunson JC, Paul E, Gracey J (2025). gggda: A ‘ggplot2’ Extension for Geometric Data Analysis. doi:10.32614/CRAN.package.gggda doi:10.32614/CRAN.package.gggda, R package version 0.1.1, https://CRAN.R-project.org/package=gggda.
- Brunson JC, Gracey J. ordr.extra: ‘ordr’ Accessors for Additional Ordination Models. R package version 0.0.0.9000. https://github.com/corybrunson/ordr.extra
- Kuhn M, Brunson JC, Posit Software PBC. ordered: ‘parsnip’ Engines and Wrappers for Ordinal Classification Models. R package version 0.0.0.9000. https://github.com/corybrunson/ordered
Accounts and repos
Find the laboratory and our current and former members on GitHub or other software development platforms:
Organizations
Members
- Mahya Aghaee
- Henrique de Assis
- Sai Narayana Bavisetty
- Lucas Böttcher
- Jason Cory Brunson
- Daniel Cruz
- Baylor Fain
- Luis L. Fonseca
- Skylar Grey
- Adam Knapp
- Helen Moore
- Ivan Ramirez Zuniga
- T.J. Sego
- Amanda Shick
- Yara Skaf
- Sandra A Tsiorintsoa
- Luis Sordo Vieira
- Matthew Wheeler