RECENT PUBLICATION
Computational models in systems biology: standards, dissemination, and best practices
Mathematical and computational models are a key technology in systems biology. Progress in the field depends on the replicability and reproducibility of their properties and behavior. For this, an essential requirement is a set of clear…
Recent Presentation
Steady Cell Phenotype: A web-based tool for the modeling of biological networks with ternary logic
We introduce Steady Cell Phenotype, a browser based interface for the analysis of ternary biological networks. It includes tools for deterministically finding all steady states of a network…
Recent Publication
Evaluation Framework for Systems Models
As decisions in drug development increasingly rely on predictions from mechanistic systems models, assessing the predictive capability of such models is becoming more important. Several frameworks for the development of quantitative systems pharmacology (QSP) models have been proposed. In this paper…
Seminar Presentation
Microbes and Human Health: A Computational Modeling Perspective
Reinhard Laubenbacher gave a talk on Microbes and human health: a computational modeling perspective in the Seminar Series of the UF College of Dental Medicine Oral Biology Department.
Recent Publication
Dramatic Transcriptomic Differences in Macaca Mulatta and Macaca Fascicularis with Plasmodium Knowlesi Infections
Plasmodium knowlesi, a model malaria parasite, is responsible for a significant portion of zoonotic malaria cases in Southeast Asia and must be controlled to avoid disease severity and fatalities.
RECENT PUBLICATION
Optimization of Agent-Based Models Through Coarse-Graining
Optimization and control are important objectives across biology and biomedicine, and mathematical models are a key enabling technology. This paper reports a computational study of model-based multi-objective optimization in the setting of microbial ecology, using agent-based models. This modeling framework is well-suited to the field, but is not…
RECENT PUBLICATION
The Why and How of Manuscript Review: What Goes Around Comes Around
Aside from conducting research itself, communicating it to the broader mathematical sciences community—as well as the general public—is the most important task that a researcher must accomplish, for the sake of progress within both the mathematical sciences and one’s own career…
INTERVIEW
Helen Moore Interview
Helen Moore was Associate Director of Quantitative Clinical Pharmacology, Bristol-Myers Squibb in Princeton, New Jersey and recently joined UF as an Associate Professor in the Laboratory for Systems Medicine.
PRESENTATION
IMAG/MSM
Reinhard Laubenbacher presented a talk at the weekly meeting of the multiscale modeling and viral pandemics working group. The title of his talk was “A modular computational framework for medical digital twins.”
POSTER PRESENTATION
American Thoracic Society
Luis Sordo Vieira presented a poster presentation at the American Thoracic Society Annual Meeting Titled Discerning the Division of Labor of Monocyte Derived Immune Cells in Invasive Aspergillosis
POSTER PRESENTATION
Society for Biological Psychiatry
Luis Sordo Vieira presented a poster at the Society for Biological Psychiatry Annual Meeting titled “Comorbidity Patterns in Hoarding Disorder”
MINI-SYMPOSIUM
Society for Mathematical Biology
Luis Sordo Vieira co-organized a mini symposium centered around the leading mathematical models of pulmonary immune responses to pulmonary insults at the Society for Mathematical Biology Annual Meeting.
MINI-SYMPOSIUM
Society for Mathematical Biology
Henrique de Assis Lopes Robeiro presented at talk at the “SMB Minisymposium: The pressing need for within-host models of the pulmonary immune response.” The title of his presentation was: “Computational Modeling Reveals the Role of Macrophages in Respiratory A. fumigatus Infection in Immunocompromised Hosts.”
RECENT PUBLICATION
Featured Publication – “A Modular Computational Framework for Medical Digital Twins”
This paper presents a modular software design that will help implement precision medicine in the form of medical digital twins which are computational models of disease processes calibrated to individual patients.
Recent Publication
Using Digital Twins in Viral Infection
Reinhard Laubenbacher, co-authored an article, Using Digital Twins in Viral Infection, in Science Magazine along with James P. Sluka, and…
GRAND ROUNDS
Grand Rounds – Department of Medicine – University of Florida
May 27th, 2021
MINI-SYMPOSIUM
AAAS Scientific Symposium – The Mathematics of Homeostasis and Health
AAA Annual Meeting, February 2021
MINI-SYMPOSIUM
The Mathematics of Homeostasis and Health
MINI-SYMPOSIUM
Working Group on Multiscale Modeling and Viral Pandemics
