Preprint Publications

  • Adam C. Knapp, Daniel A. Cruz, Borna Mehrad, Reinhard C. Laubenbacher. Personalizing computational models to construct medical digital twins. bioRxiv 2024.05.31.596692; doi: 10.1101/2024.05.31.596692
  • Murrugarra D, Veliz-Cuba A, Dimitrova E, Kadelka C, Wheeler M, Laubenbacher R. Modular control of Boolean network models. ArXiv [Preprint]. 2024 Nov 4:arXiv:2401.12477v3. PMID: 38344220; PMCID: PMC10854280.
  • T.J. Sego, Matthias König, Luis L. Fonseca, Baylor Fain, Adam C. Knapp, Krishna Tiwari, Henning Hermjakob, Herbert M. Sauro, James A. Glazier, Reinhard C. Laubenbacher, Rahuman S. Malik-Sheriff. EFECT – A Method and Metric to Assess the Reproducibility of Stochastic Simulation Studies. arXiv. 2024, June 24.  doi: 10.48550/arXiv.2406.16820
  • Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC. Surrogate modeling and control of medical digital twins. ArXiv [Preprint]. 2024 May 20:arXiv:2402.05750v2. PMID: 38827450; PMCID: PMC11142319. doi: 10.48550/arXiv.2402.05750
  • Böttcher L, Fonseca LL, Laubenbacher RC. Control of Medical Digital Twins with Artificial Neural Networks. bioRxiv [Preprint]. 2024 Mar 20:2024.03.18.585589. doi: 10.1101/2024.03.18.585589. PMID: 38562787; PMCID: PMC10983973.
  • Chesnais F, Sego TJ, Engstler E, Battilocchi M, Danovi D, Glazier JA, Veschini L. A spatialised agent-based model of NOTCH signalling pathway in Endothelial Cells predicts emergent heterogeneity due to continual dynamic phenotypic adjustments. bioRxiv. 2022 Aug 6. doi: 10.1101/2022.08.06.503043.
  • Gianlupi JF, Sego TJ, Sluka JP, Glazier JA. PhenoCellPy: A Python package for biological cell behavior modeling. bioRxiv. 2023 Apr 14. doi: 10.1101/2023.04.12.535625.
  • Brunson JC, Skaf Y. Fixed and adaptive landmark sets for finite pseudometric spaces. 2022 Dec 21. arXiv: 2212.09826
  • Kadelka C, Keilty B, Laubenbacher R. Collectively canalizing Boolean functions. 2020 Oct 5. arXiv: 2008.13741